Exploiting Hardware-Software Co-Design to Speed Up Molecular Dynamics Simulation
D. E. Shaw Research
Anton 2 is the second generation of a family of massively parallel special-purpose supercomputers for molecular dynamics simulations. The embedded software that runs on the Anton machines is co-designed with the underlying hardware, allowing the code to exploit unique capabilities of the hardware, and the hardware to make careful trade-offs for maximum performance, while preserving flexibility and programmability. This closely coupled co-design is a major reason for Anton's large performance improvement—as much as two orders of magnitude—over commodity clusters and general-purpose supercomputers
Biography:Mark Moraes is Head of Engineering at D. E. Shaw Research, where he leads the engineering and systems development work conducted at DESRES. Mark received an M.A.Sc. from the University of Toronto, and a B.Tech. from the Indian Institute of Technology, New Delhi, both in electrical engineering.
|